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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10176483_10176568_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10176483 - 10176568
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCAAG
5'SS Class:
major
3'SS Sequence:
GTCTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAC
U12 Branch Point Sequence:
ACGGCCACATCT
Flanking Amino Acid:
ASWPSQEQLEGDVPGTAVSS
Intron Amino Acid Position:
1007

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
68.8
43.8
Major BPS
55.9
0.15
1.2
49
38
Major PPT
80.2
0.68
0.8
72.8
37.5
Minor 5ss
44.3
-0.6
2.7
56.9
47.4
Minor BPS
41.4
-0.5
2
55.29
46.4

Associated Gene:

Gene:
KIFC3
Ensembl Gene ID:
ENSAPLG00000003400
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027764
10162182 - 10178335
16154
ENSAPLT00000003479
10154421 - 10177647
23227
ENSAPLT00000047805
10161332 - 10177647
16316
ENSAPLT00000035552
10162182 - 10178335
16154
ENSAPLT00000034238
10162182 - 10178335
16154