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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10181971_10182384_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10181971 - 10182384
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTCTT
5'SS Class:
major
3'SS Sequence:
CTTTTCTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TTTTCTTTTAAG
Flanking Amino Acid:
VDLLNIVNQKASLWKLDLCT
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.3
68.8
43.8
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
81.9
0.72
0.9
86.8
24.5
Minor 5ss
35.7
-1.6
3.1
45.7
42.5
Minor BPS
62.7
0.26
1.8
72.54
40

Associated Gene:

Gene:
KATNB1
Ensembl Gene ID:
ENSAPLG00000003613
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003799
10180290 - 10195932
15643