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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10182933_10183924_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10182933 - 10183924
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
GTCTACTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TGTTCCTTCACT
Flanking Amino Acid:
IGLKATDFLPAVKNQSQTEL
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
73.7
35.7
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
80.5
0.69
0.9
76.9
36.9
Minor 5ss
39.4
-1.2
3.3
58.2
40.5
Minor BPS
78.7
0.98
1.7
92.9
35.6

Associated Gene:

Gene:
KATNB1
Ensembl Gene ID:
ENSAPLG00000003613
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003799
10180290 - 10195932
15643