About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10185911_10186030_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10185911 - 10186030
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
TTCTTTTTATCA
Flanking Amino Acid:
RPSTSCSKPQRVKHNSESER
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
87.8
0.85
0.8
89
26.2
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
65.1
0.47
1.6
74.08
38.4

Associated Gene:

Gene:
KATNB1
Ensembl Gene ID:
ENSAPLG00000003613
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003799
10180290 - 10195932
15643