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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10186798_10187020_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10186798 - 10187020
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATAA
5'SS Class:
major
3'SS Sequence:
TGCCTTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AGTTTCTGAACT
Flanking Amino Acid:
SCIEEEATPVRCVLFNPDGC
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
69
31.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
72.7
0.51
0.8
65.3
36.2
Minor 5ss
42.7
-0.8
3
55.5
48.7
Minor BPS
72.1
0.77
1.4
84.15
35.8

Associated Gene:

Gene:
KATNB1
Ensembl Gene ID:
ENSAPLG00000003613
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003799
10180290 - 10195932
15643