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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10188988_10189540_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10188988 - 10189540
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCCT
5'SS Class:
major
3'SS Sequence:
TCTTCACCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTTCTTCACCT
Flanking Amino Acid:
ASGSLDTNIKLWDVRRKGCV
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.4
41.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
76.6
0.6
0.8
71
28.9
Minor 5ss
32.7
-2
3.4
48.4
47.3
Minor BPS
66.5
0.6
1.8
87.98
37.6

Associated Gene:

Gene:
KATNB1
Ensembl Gene ID:
ENSAPLG00000003613
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003799
10180290 - 10195932
15643