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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10191815_10193862_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10191815 - 10193862
Intron Length:
2048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TAGCCATTGATT
Flanking Amino Acid:
WSVNKPNCIMSLTGHTSPIE
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.8
39.2
Major BPS
76.2
0.65
1
67
39.8
Major PPT
89.8
0.89
0.7
84.7
30.1
Minor 5ss
33.9
-1.8
2.9
39
40
Minor BPS
55.6
0.26
1.6
70.75
40.1

Associated Gene:

Gene:
KATNB1
Ensembl Gene ID:
ENSAPLG00000003613
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003799
10180290 - 10195932
15643