Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10214663_10215401_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10214663 - 10215401

Intron Length:

739

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGTTG

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTCCCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTTAT

U12 Branch Point Sequence:

GGCCTCTTATTG

Flanking Amino Acid:

KPGFTGALCQDVVLKLACEE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

70.4

42.5

Major BPS

79.1

0.72

69.3

38.4

Major PPT

84.4

0.77

0.7

77.3

31.5

Minor 5ss

38.9

-1.2

3.6

54.5

49.7

Minor BPS

-0.3

1.6

45.7

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004415

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004526

10212679 - 10219313

6635