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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10216454_10216989_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10216454 - 10216989
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGCTCATGAGCT
Flanking Amino Acid:
KVPFALTAVDKLVQFVVKEG
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
75
35.2
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
82.5
0.73
0.7
80.4
24.9
Minor 5ss
30.7
-2.2
3.3
40.4
40
Minor BPS
49.2
0.02
2
71.31
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004415
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004526
10212679 - 10219313
6635