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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10217236_10217843_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10217236 - 10217843
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCAAC
5'SS Class:
major
3'SS Sequence:
CCCCATGTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
TCATCCATCATG
Flanking Amino Acid:
QDVRHELIEQGCPHDETVMY
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.4
38.7
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
65.6
0.35
0.9
56
38.5
Minor 5ss
33.8
-1.8
2.8
34.7
41.5
Minor BPS
48.1
-0.2
2.1
56.86
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004415
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004526
10212679 - 10219313
6635