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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10218516_10219212_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10218516 - 10219212
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACGTATG
5'SS Class:
major
3'SS Sequence:
CTCTCTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
AGACCTGTAACC
Flanking Amino Acid:
HSRADHQDVQEPNLWLPGGL
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.1
72.9
44.2
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
78.2
0.64
0.9
75.8
32.7
Minor 5ss
37.8
-1.4
3
42.4
44.5
Minor BPS
49.1
-0
2
60.01
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004415
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004526
10212679 - 10219313
6635