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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10221536_10222058_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10221536 - 10222058
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGCGTGGC
5'SS Class:
weak_major
3'SS Sequence:
TGTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AGTTGTTTCATT
Flanking Amino Acid:
WMMDHQTVVHLCWINSKHVL
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.1
51.1
40.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
84.9
0.79
0.8
82.2
34.1
Minor 5ss
29.4
-2.4
3.4
43.6
44.2
Minor BPS
48.7
-0
2.1
70.39
41.4

Associated Gene:

Gene:
ADGRG3
Ensembl Gene ID:
ENSAPLG00000004491
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004618
10220865 - 10226180
5316