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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10222153_10222438_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10222153 - 10222438
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCACT
5'SS Class:
major
3'SS Sequence:
CTTTGTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCACAA
U12 Branch Point Sequence:
TACCCCACAATG
Flanking Amino Acid:
YLAKLCLVGWGFPALVVAVA
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
71.4
40.3
Major BPS
47.4
-0.1
1
52.5
32.6
Major PPT
86.9
0.83
0.7
84.7
30.2
Minor 5ss
36.1
-1.6
2.9
41.9
44.5
Minor BPS
46.4
-0.4
1.9
51.62
42.6

Associated Gene:

Gene:
ADGRG3
Ensembl Gene ID:
ENSAPLG00000004491
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004618
10220865 - 10226180
5316