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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10225583_10226131_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10225583 - 10226131
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
GGGGGCTGACAC
Flanking Amino Acid:
DTVLLLLLLSDAARGQDSCA
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
81.6
0.71
0.8
73.7
36.9
Minor 5ss
32.1
-2
2.8
39.3
41.2
Minor BPS
35.9
-1
2
37.76
39.8

Associated Gene:

Gene:
ADGRG3
Ensembl Gene ID:
ENSAPLG00000004491
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004618
10220865 - 10226180
5316