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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10228330_10228588_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10228330 - 10228588
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGACAC
U12 Branch Point Sequence:
CACGGCGTAACC
Flanking Amino Acid:
SIGGKSTSATMCWITSPLIH
Intron Amino Acid Position:
827

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
80
34.8
Major BPS
49.5
-0
1.2
58.5
38.2
Major PPT
74.3
0.55
0.7
66
30.2
Minor 5ss
38.3
-1.3
3.1
54.8
42.5
Minor BPS
42.4
-0.5
2.4
50.39
46.5

Associated Gene:

Gene:
ADGRG1
Ensembl Gene ID:
ENSAPLG00000004555
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004706
10226769 - 10235550
8782