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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10228701_10229981_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10228701 - 10229981
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCATG
5'SS Class:
major
3'SS Sequence:
TCTTAACACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTGTTCTTAACA
Flanking Amino Acid:
LLLKLCLVGWGLPFCCVMLI
Intron Amino Acid Position:
790

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
68.8
43.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
68.3
0.41
1
59.4
40.8
Minor 5ss
37.1
-1.5
3
40.5
45.5
Minor BPS
77.8
0.87
1.2
78.47
38.6

Associated Gene:

Gene:
ADGRG1
Ensembl Gene ID:
ENSAPLG00000004555
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004706
10226769 - 10235550
8782