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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10230257_10230783_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10230257 - 10230783
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTCT
5'SS Class:
strong_major
3'SS Sequence:
CTCACTTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TTCCCCTCACTT
Flanking Amino Acid:
SICTIFFLYFRSKQRDQIMS
Intron Amino Acid Position:
698

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.8
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
77.7
0.62
0.8
68.9
37
Minor 5ss
45.5
-0.5
3.1
65.3
46.1
Minor BPS
53.3
0.18
1.9
73.49
43.7

Associated Gene:

Gene:
ADGRG1
Ensembl Gene ID:
ENSAPLG00000004555
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004706
10226769 - 10235550
8782