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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10230900_10230980_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10230900 - 10230980
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTAGT
5'SS Class:
major
3'SS Sequence:
TTCTTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
TGCTCCTTCACT
Flanking Amino Acid:
NHLTYFAVLMVSSPEITYVH
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
70.5
41.3
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
83.9
0.76
0.7
77
31.7
Minor 5ss
30.8
-2.2
3
38.8
41.6
Minor BPS
71.7
0.77
1.8
84.57
42.1

Associated Gene:

Gene:
ADGRG1
Ensembl Gene ID:
ENSAPLG00000004555
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004706
10226769 - 10235550
8782