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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10231085_10231474_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10231085 - 10231474
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCAGAT
U12 Branch Point Sequence:
CTGCCGGTCACC
Flanking Amino Acid:
LCVFWQEDSTAASSGNWDSY
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
32
Major BPS
52.7
0.07
1.1
48.6
36.6
Major PPT
81.4
0.71
0.7
80.5
24.9
Minor 5ss
31.3
-2.1
3.3
40.8
45.4
Minor BPS
37.9
-0.9
2.7
50.81
46.2

Associated Gene:

Gene:
ADGRG1
Ensembl Gene ID:
ENSAPLG00000004555
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004706
10226769 - 10235550
8782