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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10231521_10232003_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10231521 - 10232003
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCATCCTGACCA
Flanking Amino Acid:
VLTFYHNQLPRNVTLLCVFW
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
67.4
44
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
84.9
0.79
0.8
82.2
34.1
Minor 5ss
32.6
-2
3.2
41
45.3
Minor BPS
58.7
0.27
1.8
69.12
43

Associated Gene:

Gene:
ADGRG1
Ensembl Gene ID:
ENSAPLG00000004555
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004706
10226769 - 10235550
8782