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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10232964_10233103_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10232964 - 10233103
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
CTCTTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TCTTCCCCACAG
Flanking Amino Acid:
SGATAQRSLRHELGALERML
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
66.3
39.5
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
78.2
0.63
0.7
72.3
26
Minor 5ss
33
-1.9
3.3
45.7
43.5
Minor BPS
43.2
-0.6
2.2
53.67
46.6

Associated Gene:

Gene:
ADGRG1
Ensembl Gene ID:
ENSAPLG00000004555
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004706
10226769 - 10235550
8782