Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10245362_10246625_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

10245362 - 10246625

Intron Length:

1264

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CTT|GCGAGCTTG

5'SS Class:

weak_major

3'SS Sequence:

GCAAGGACAAAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CACTCAC

U12 Branch Point Sequence:

TTTCCGTCCATC

Flanking Amino Acid:

RSGGGKPVGASLPSGSLSAV

Intron Amino Acid Position:

516

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.8

0.09

1.4

52.2

44.7

Major BPS

64.9

0.37

29.8

Major PPT

43.8

-0.3

1.1

34.5

Minor 5ss

34.3

-1.8

4.2

52.3

45.8

Minor BPS

-0.4

2.5

63.85

42.1

Associated Gene:

Gene:

ADGRG5

Ensembl Gene ID:

ENSAPLG00000027865

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022680

10245213 - 10250679

5467