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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10248004_10248173_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10248004 - 10248173
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTGCGTGGG
5'SS Class:
weak_major
3'SS Sequence:
AAACCTGAGCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACAAAA
U12 Branch Point Sequence:
AAAACCTGAGCC
Flanking Amino Acid:
AVLMLSGGGGPVLESLTYIS
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1.2
47.2
43.3
Major BPS
49.2
-0
0.9
54.9
27
Major PPT
49.3
-0
1.1
40
43
Minor 5ss
27.6
-2.6
3.3
31.1
42.9
Minor BPS
48.7
-0.1
1.7
57.55
40

Associated Gene:

Gene:
ADGRG5
Ensembl Gene ID:
ENSAPLG00000027865
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022680
10245213 - 10250679
5467