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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10248608_10248841_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10248608 - 10248841
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCTGGTG
5'SS Class:
weak_major
3'SS Sequence:
CCCTTCTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CATCTCTCACCT
Flanking Amino Acid:
PVEIQFWHNLDASNATCVFW
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.5
0.18
1.1
49.6
41
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
72.7
0.51
0.9
65.9
34.6
Minor 5ss
26.5
-2.7
3.7
34.2
44
Minor BPS
48.5
-0
1.8
66.43
44

Associated Gene:

Gene:
ADGRG5
Ensembl Gene ID:
ENSAPLG00000027865
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022680
10245213 - 10250679
5467