About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10248_10621_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10248 - 10621
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CCACTATATGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGAATACTAATT
Flanking Amino Acid:
YGLCEETLFHRVQVVETPPK
Intron Amino Acid Position:
879

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
56.7
0.15
1.1
56.7
36.9
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
46.2
-0.2
1.9
64.39
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011417
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011896
3649 - 30288
26640