About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1026772_1029269_R

Intron Information:

Intron Rank:
139258
Intron Class:
major
Intron Phase:
Intron Coordinates:
1026772 - 1029269
Intron Length:
2498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCAATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAATCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79.9
0.67
0.8
74
34.3
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
52.8
0.08
2.3
77.79
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022375
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028146
1026603 - 1035122
8520