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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10273296_10274119_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10273296 - 10274119
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
TCTTTGATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TGCTCTTTGATT
Flanking Amino Acid:
RHTVYPKPEEWPKSEYSEID
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.8
40.4
Major BPS
84
0.85
0.9
75
39.9
Major PPT
82.3
0.73
0.9
73.7
40.5
Minor 5ss
43.1
-0.8
2.8
56.7
41.7
Minor BPS
70.9
0.74
1.2
79.21
37.5

Associated Gene:

Gene:
POLR2C
Ensembl Gene ID:
ENSAPLG00000005385
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005624
10271986 - 10279308
7323