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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10274289_10274804_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10274289 - 10274804
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTTTTCCATA
Flanking Amino Acid:
NDPNDYVEQDDILIVKLRKG
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.4
0.75
0.6
80.2
25.4
Minor 5ss
34.5
-1.8
3.3
46.4
44.2
Minor BPS
47.7
-0.1
1.9
62.08
39.4

Associated Gene:

Gene:
POLR2C
Ensembl Gene ID:
ENSAPLG00000005385
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005624
10271986 - 10279308
7323