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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10276091_10276224_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10276091 - 10276224
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
ATGTCTGTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
AATGTTTTGACC
Flanking Amino Acid:
DIVDKMQYSRDCTCDEFCPE
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
73
33.2
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
70.6
0.46
1
61.8
43.9
Minor 5ss
30.9
-2.2
2.6
29.7
36.6
Minor BPS
58
0.23
1.3
63.67
36.1

Associated Gene:

Gene:
POLR2C
Ensembl Gene ID:
ENSAPLG00000005385
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005624
10271986 - 10279308
7323