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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10276867_10277136_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10276867 - 10277136
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTGAGCACC
5'SS Class:
weak_major
3'SS Sequence:
CTTTGTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
CCCTTCTCAGCC
Flanking Amino Acid:
VKFIIENTDLAVANSIRRVF
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.1
0.22
1.3
56.7
42.7
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
82.1
0.72
0.9
76.3
37.7
Minor 5ss
36.1
-1.6
2.8
40
38.8
Minor BPS
47.3
-0.2
1.8
53.43
44.7

Associated Gene:

Gene:
POLR2C
Ensembl Gene ID:
ENSAPLG00000005385
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005624
10271986 - 10279308
7323