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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1027691_1029269_R

Intron Information:

Intron Rank:
139256
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
1027691 - 1029269
Intron Length:
1579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
AAATGATCAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTCAAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
56.5
0.15
1.1
48.8
43.1
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
54.7
0.23
2
81.82
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022375
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022923
1027676 - 1033294
5619