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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10277511_10278681_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10277511 - 10278681
Intron Length:
1171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TCGTGTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
CGGCGCTGACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
71.7
0.49
0.9
65.6
36.1
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
40.6
-0.7
2
45.13
43

Associated Gene:

Gene:
POLR2C
Ensembl Gene ID:
ENSAPLG00000005385
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005624
10271986 - 10279308
7323
Gene:
COQ9
Ensembl Gene ID:
ENSAPLG00000005848
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006083
10277384 - 10284814
7431