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Intron Name: Anas_platyrhynchos_platyrhynchos_12_10278736_10279152_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

10278736 - 10279152

Intron Length:

417

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACATTG

5'SS Class:

major

3'SS Sequence:

CCCCATCTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTAAA

U12 Branch Point Sequence:

TTCTCCCCATCT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.67

1.1

72.5

39.9

Major BPS

61.3

0.28

1.1

61.7

34.1

Major PPT

65.6

0.35

0.8

33.1

Minor 5ss

47.1

-0.3

2.9

64.8

46.5

Minor BPS

49.8

0.07

2.1

77.09

Associated Gene:

Gene:

POLR2C

Ensembl Gene ID:

ENSAPLG00000005385

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005624

10271986 - 10279308

7323

Gene:

COQ9

Ensembl Gene ID:

ENSAPLG00000005848

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006083

10277384 - 10284814

7431