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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10283048_10283412_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10283048 - 10283412
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
ATGACCCTATCT
Flanking Amino Acid:
TAEAIAEGAKTLGLSGAAAG
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
68.8
42.3
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
90.6
0.91
0.6
85.8
21.3
Minor 5ss
38.2
-1.3
3.1
49.2
47.1
Minor BPS
50
0.08
2
72.19
44.2

Associated Gene:

Gene:
COQ9
Ensembl Gene ID:
ENSAPLG00000005848
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006083
10277384 - 10284814
7431