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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10286052_10286546_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10286052 - 10286546
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTGTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTGTAC
U12 Branch Point Sequence:
CTGCCCTGTACT
Flanking Amino Acid:
MAVAVAAAAEM
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
44.7
-0.3
1.3
40.7
39.7
Major PPT
71.4
0.48
1.1
65.1
45.5
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
51.9
0.14
1.9
70.49
45.9

Associated Gene:

Gene:
CIAPIN1
Ensembl Gene ID:
ENSAPLG00000006126
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029561
10285743 - 10291730
5988