Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10287199_10288191_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10287199 - 10288191

Intron Length:

993

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TTGTGTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTATTAT

U12 Branch Point Sequence:

CTGCTATTATCT

Flanking Amino Acid:

LLKEPVITESGNNSKIKTAA

Intron Amino Acid Position:

133

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.8

76.5

26.8

Major BPS

72.4

0.56

1.1

63.7

42.3

Major PPT

82.1

0.72

0.9

73.5

41.8

Minor 5ss

24.3

-3

3.1

28.7

43.6

Minor BPS

-0

1.9

65.92

44.6

Associated Gene:

Gene:

CIAPIN1

Ensembl Gene ID:

ENSAPLG00000006126

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029561

10285743 - 10291730

5988

ENSAPLT00000006361

10284836 - 10291730

6895