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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10330948_10331980_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10330948 - 10331980
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GTTACTTTACCA
Flanking Amino Acid:
EPQTTNLQKQVGLISGICMI
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
77.3
0.62
1
75.8
37.4
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
62.7
0.4
1.7
72.73
39.2

Associated Gene:

Gene:
SLC7A9
Ensembl Gene ID:
ENSAPLG00000006352
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006615
10321405 - 10332818
11414