About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10354100_10355077_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10354100 - 10355077
Intron Length:
978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATTATC
5'SS Class:
strong_major
3'SS Sequence:
TATATGTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTTGCCTTCAAT
Flanking Amino Acid:
AQERDHLIFLARCLENENHG
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
79.9
33.1
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
79.8
0.67
0.9
73.3
41.5
Minor 5ss
40.5
-1.1
2.8
51.8
39.1
Minor BPS
63.2
0.49
2
85.06
41.4

Associated Gene:

Gene:
CEP89
Ensembl Gene ID:
ENSAPLG00000006679
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006968
10345725 - 10369151
23427