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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10358907_10359372_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10358907 - 10359372
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATAAACT
Flanking Amino Acid:
NKNNFITTTEWHQLQTQATL
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.1
76.7
34.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.1
0.74
0.9
77.5
35.5
Minor 5ss
31.7
-2.1
4
45.9
43.7
Minor BPS
60.6
0.41
1.9
82.01
39.1

Associated Gene:

Gene:
CEP89
Ensembl Gene ID:
ENSAPLG00000006679
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006968
10345725 - 10369151
23427