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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10359477_10360354_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10359477 - 10360354
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
ATTCCTTTATCT
Flanking Amino Acid:
EKEDLSLAYEEDMKNFKVQV
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
84.6
0.86
1
74
41.2
Major PPT
85.7
0.8
0.8
77.2
36.8
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
68.3
0.65
1.6
83.89
36.8

Associated Gene:

Gene:
CEP89
Ensembl Gene ID:
ENSAPLG00000006679
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006968
10345725 - 10369151
23427