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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10361710_10362094_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10361710 - 10362094
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAGAA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTGTTTTAATA
Flanking Amino Acid:
KEAAKKIHKEEEATELLSLR
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
67.4
33.5
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
80
0.68
0.9
77.6
35.5
Minor 5ss
22.9
-3.1
3.3
28.2
43.9
Minor BPS
71.7
0.68
1.3
78
33.3

Associated Gene:

Gene:
CEP89
Ensembl Gene ID:
ENSAPLG00000006679
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006968
10345725 - 10369151
23427