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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10365995_10366589_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10365995 - 10366589
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAACGTAT
5'SS Class:
major
3'SS Sequence:
TTTCTACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
CAAGCTTTAAAC
Flanking Amino Acid:
PYATVTELRMGPNWKLDGSD
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
66.6
41.6
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
87.2
0.84
0.7
81.7
29
Minor 5ss
43.5
-0.7
3.3
55.6
48.7
Minor BPS
53.7
0.1
1.6
57.36
41.2

Associated Gene:

Gene:
CEP89
Ensembl Gene ID:
ENSAPLG00000006679
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006968
10345725 - 10369151
23427