About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10368809_10369428_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10368809 - 10369428
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTCTTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.2
0.59
0.9
74.6
34
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
80.3
1.03
1.2
91.56
30.6

Associated Gene:

Gene:
FAAP24
Ensembl Gene ID:
ENSAPLG00000006977
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007237
10367129 - 10371667
4539