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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10375744_10377102_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10375744 - 10377102
Intron Length:
1359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TCTCTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATTCTTACAATT
Flanking Amino Acid:
ISCQDTTASMHSKSATYSVG
Intron Amino Acid Position:
601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.1
36.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
88.8
0.87
0.6
83.5
24.9
Minor 5ss
34.8
-1.7
3
41.6
39.5
Minor BPS
47.8
-0
1.7
68.65
36.2

Associated Gene:

Gene:
RHPN2
Ensembl Gene ID:
ENSAPLG00000007093
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018285
10375492 - 10401211
25720
ENSAPLT00000007412
10375492 - 10401861
26370