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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10381063_10381782_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10381063 - 10381782
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTGCTTTATTT
Flanking Amino Acid:
LVKMTQEAAKVGEVYMMVNT
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
79.5
0.66
0.8
78
35.1
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
59.8
0.39
1.7
76.04
41.4

Associated Gene:

Gene:
RHPN2
Ensembl Gene ID:
ENSAPLG00000007093
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018285
10375492 - 10401211
25720
ENSAPLT00000007412
10375492 - 10401861
26370