Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10390900_10392479_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10390900 - 10392479

Intron Length:

1580

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTATGTGCC

5'SS Class:

major

3'SS Sequence:

CTTCTTTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATAAAA

U12 Branch Point Sequence:

TCAGCAATAAAA

Flanking Amino Acid:

RMRAGAENLLRATTNNKVRE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

66.2

37.9

Major BPS

56.5

0.16

0.9

63.3

29.1

Major PPT

88.7

0.87

0.6

84.3

23.6

Minor 5ss

40.5

-1.1

3.1

53.9

43.4

Minor BPS

44.7

-0.4

55.86

42.4

Associated Gene:

Gene:

RHPN2

Ensembl Gene ID:

ENSAPLG00000007093

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007412

10375492 - 10401861

26370

ENSAPLT00000018285

10375492 - 10401211

25720