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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10392596_10400889_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10392596 - 10400889
Intron Length:
8294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
GTTTCCTTAATT
Flanking Amino Acid:
MGCNPLAETGR
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
80.8
0.69
0.8
77.9
34.1
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
90
1.33
0.8
96.98
27.6

Associated Gene:

Gene:
RHPN2
Ensembl Gene ID:
ENSAPLG00000007093
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018285
10375492 - 10401211
25720