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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10392596_10401792_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10392596 - 10401792
Intron Length:
9197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
GTTTCCTTAATT
Flanking Amino Acid:
EPAEDSYFRKGCNPLAETGR
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
80.8
0.69
0.8
77.9
34.1
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
90
1.33
0.8
96.98
27.6

Associated Gene:

Gene:
RHPN2
Ensembl Gene ID:
ENSAPLG00000007093
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007412
10375492 - 10401861
26370