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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10410626_10410893_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10410626 - 10410893
Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGATAT
5'SS Class:
major
3'SS Sequence:
GTTTACTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CTTACTTTAAAT
Flanking Amino Acid:
GYFNTVGTKEGWTPSAFISS
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.2
77.7
33.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.1
0.52
1.1
76
38
Minor 5ss
35
-1.7
3.1
47.6
47.9
Minor BPS
69.6
0.69
1.4
81.86
39.5

Associated Gene:

Gene:
GPATCH1
Ensembl Gene ID:
ENSAPLG00000007584
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007906
10408603 - 10425467
16865