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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10413883_10416308_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10413883 - 10416308
Intron Length:
2426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TGGTCATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CACATTTTAAAT
Flanking Amino Acid:
TAPKQYKYKKRSDTEVKYIG
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
80.9
31
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.5
0.51
0.9
66.6
39.6
Minor 5ss
37.8
-1.4
3
51.4
38.8
Minor BPS
51.9
0.14
1.5
62.21
42

Associated Gene:

Gene:
GPATCH1
Ensembl Gene ID:
ENSAPLG00000007584
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007906
10408603 - 10425467
16865